What reference are the variants called against for the genomic data?

All variants are called against the hg38/GRCh38 reference. Below are locations of the public reference files in different formats. 

 

FASTA: gs://genomics-public-data/references/hg38/v0/Homo_sapiens_assembly38.fasta

FAI: gs://genomics-public-data/references/hg38/v0/Homo_sapiens_assembly38.fasta.fai

DICT: gs://genomics-public-data/references/hg38/v0/Homo_sapiens_assembly38.dict

 

For more detailed information regarding the the genomic data, we recommend the following articles:

 

How the Genomic data are organized

All of Us Genomic Quality Report

 

 

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